IL_7QV1_018

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAC*GAGUGAAAGAGAUC

Length

18 nucleotides

Bulged bases

7QV1|1|V|G|550, 7QV1|1|V|U|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QV1_018 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1833

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

7QV1|1|V|G|528
7QV1|1|V|C|529
7QV1|1|V|A|530
7QV1|1|V|C|531
*
7QV1|1|V|G|542
7QV1|1|V|A|543
7QV1|1|V|G|544
7QV1|1|V|U|545
7QV1|1|V|G|546
7QV1|1|V|A|547
7QV1|1|V|A|548
7QV1|1|V|A|549
7QV1|1|V|G|550
7QV1|1|V|A|551
7QV1|1|V|G|552
7QV1|1|V|A|553
7QV1|1|V|U|554
7QV1|1|V|C|555

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24