IL_7QV1_024

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7QV1|1|V|G|848, 7QV1|1|V|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QV1_024 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1123

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7QV1|1|V|G|721
7QV1|1|V|A|722
7QV1|1|V|A|723
7QV1|1|V|A|724
7QV1|1|V|C|725
*
7QV1|1|V|G|846
7QV1|1|V|A|847
7QV1|1|V|G|848
7QV1|1|V|A|849
7QV1|1|V|U|850
7QV1|1|V|A|851
7QV1|1|V|G|852
7QV1|1|V|C|853

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15