IL_7QV1_175

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

7QV1|1|a|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QV1_175 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.3112

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QV1|1|a|C|1416
7QV1|1|a|A|1417
7QV1|1|a|C|1418
*
7QV1|1|a|G|1501
7QV1|1|a|A|1502
7QV1|1|a|A|1503
7QV1|1|a|G|1504

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain V

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12