IL_7QVP_010

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

7QVP|1|L6|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_010 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.2019

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7QVP|1|L1|G|143
7QVP|1|L1|U|144
*
7QVP|1|L6|A|12
7QVP|1|L6|U|13
7QVP|1|L6|C|14

Current chains

Chain L1

5.8S ribosomal RNA

Chain L6

28S ribosomal RNA

Nearby chains

Chain MN

60S ribosomal protein L15

Chain MX

60S ribosomal protein L23a