IL_7QVP_036

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCC*GGG

Length

8 nucleotides

Bulged bases

7QVP|1|L5|U|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_036 not in the Motif Atlas

Geometric match to IL_4M6D_013

Geometric discrepancy: 0.3592

The information below is about IL_4M6D_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QVP|1|L5|U|512
7QVP|1|L5|U|513
7QVP|1|L5|U|514
7QVP|1|L5|C|515
7QVP|1|L5|C|516
*
7QVP|1|L5|G|645
7QVP|1|L5|G|646
7QVP|1|L5|G|647

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L27a