IL_7QVP_077

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

7QVP|1|L5|U|1757

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_077 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.2211

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QVP|1|L5|U|1756
7QVP|1|L5|U|1757
7QVP|1|L5|G|1758
7QVP|1|L5|G|1759
*
7QVP|1|L5|U|1773
7QVP|1|L5|C|1774
7QVP|1|L5|A|1775

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like