IL_7QVP_128

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7QVP|1|L5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_128 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.0871

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7QVP|1|L5|G|3916
7QVP|1|L5|A|3917
*
7QVP|1|L5|U|4384
7QVP|1|L5|A|4385
7QVP|1|L5|C|4386
7QVP|1|L5|C|4387

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8