IL_7QVP_187

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7QVP|1|L6|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_187 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.3317

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7QVP|1|L6|C|459
7QVP|1|L6|C|460
*
7QVP|1|L6|G|695
7QVP|1|L6|C|696
7QVP|1|L6|G|697

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain ME

60S ribosomal protein L6

Chain Mr

60S ribosomal protein L28