IL_7QVP_215

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_215 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1557

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7QVP|1|L6|C|1431
7QVP|1|L6|G|1432
7QVP|1|L6|A|1433
7QVP|1|L6|G|1434
*
7QVP|1|L6|C|1450
7QVP|1|L6|G|1451
7QVP|1|L6|A|1452
7QVP|1|L6|G|1453

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MQ

60S ribosomal protein L18