IL_7QVP_236

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_236 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.1208

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QVP|1|L6|A|1749
7QVP|1|L6|G|1750
7QVP|1|L6|A|1751
*
7QVP|1|L6|U|1779
7QVP|1|L6|A|1780
7QVP|1|L6|U|1781

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain L9

5S ribosomal RNA; 5S rRNA

Chain MD

60S ribosomal protein L5

Chain MI

60S ribosomal protein L10-like