IL_7QVP_238

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

7QVP|1|L6|G|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_238 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.1831

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7QVP|1|L6|C|1814
7QVP|1|L6|G|1815
7QVP|1|L6|C|1816
*
7QVP|1|L6|G|1823
7QVP|1|L6|G|1824

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MD

60S ribosomal protein L5

Chain MT

60S ribosomal protein L21

Chain Mb

60S ribosomal protein L29