IL_7QVP_243

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

7QVP|1|L6|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_243 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3746

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7QVP|1|L6|U|1918
7QVP|1|L6|G|1919
7QVP|1|L6|C|1920
*
7QVP|1|L6|G|2063
7QVP|1|L6|G|2064

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MF

60S ribosomal protein L7

Chain MO

60S ribosomal protein L13a

Chain MS

60S ribosomal protein L18a

Chain Mf

60S ribosomal protein L35a