IL_7QVP_252

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

7QVP|1|L6|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_252 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.5273

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7QVP|1|L6|G|2299
7QVP|1|L6|A|2300
7QVP|1|L6|G|2301
*
7QVP|1|L6|C|2334
7QVP|1|L6|C|2335

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain MC

60S ribosomal protein L4

Chain Me

60S ribosomal protein L32

Chain Mr

60S ribosomal protein L28