IL_7QVP_254

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

7QVP|1|L6|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_254 not in the Motif Atlas

Geometric match to IL_7RQB_033

Geometric discrepancy: 0.2485

The information below is about IL_7RQB_033

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

7QVP|1|L6|U|2312
7QVP|1|L6|A|2313
7QVP|1|L6|G|2314
*
7QVP|1|L6|C|2325
7QVP|1|L6|G|2326

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain Me

60S ribosomal protein L32