IL_7QVP_256

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_256 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.087

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

7QVP|1|L6|G|2406
7QVP|1|L6|G|2407
7QVP|1|L6|U|2408
7QVP|1|L6|U|2409
*
7QVP|1|L6|A|2783
7QVP|1|L6|C|2784

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MX

60S ribosomal protein L23a

Chain Mg

60S ribosomal protein L34

Chain Mj

Ribosomal protein L37

Chain Ml

60S ribosomal protein L39