IL_7QVP_260

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7QVP|1|L6|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_260 not in the Motif Atlas

Geometric match to IL_7RQB_041

Geometric discrepancy: 0.1878

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

7QVP|1|L6|G|2542
7QVP|1|L6|A|2543
7QVP|1|L6|G|2544
7QVP|1|L6|U|2545
7QVP|1|L6|G|2546
7QVP|1|L6|G|2547
*
7QVP|1|L6|C|2772
7QVP|1|L6|G|2773
7QVP|1|L6|C|2774

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain Mk

60S ribosomal protein L38