IL_7QVP_263

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7QVP|1|L6|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_263 not in the Motif Atlas

Geometric match to IL_3MJA_001

Geometric discrepancy: 0.3669

The information below is about IL_3MJA_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

7QVP|1|L6|C|2613
7QVP|1|L6|C|2614
*
7QVP|1|L6|G|2724
7QVP|1|L6|A|2725
7QVP|1|L6|G|2726

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MR

60S ribosomal protein L19

Chain Mg

60S ribosomal protein L34