IL_7QVP_270

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_270 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.0868

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7QVP|1|L6|G|2847
7QVP|1|L6|G|2848
7QVP|1|L6|A|2849
7QVP|1|L6|A|2850
*
7QVP|1|L6|U|3840
7QVP|1|L6|C|3841

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain MV

60S ribosomal protein L23