IL_7QVP_280

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L6|C|3708
7QVP|1|L6|U|3709
7QVP|1|L6|G|3710
7QVP|1|L6|A|3711
7QVP|1|L6|A|3712
7QVP|1|L6|U|3713
7QVP|1|L6|G|3714
*
7QVP|1|L6|C|3739
7QVP|1|L6|G|3740
7QVP|1|L6|C|3741
7QVP|1|L6|G|3742

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain B5

Transfer RNA; tRNA

Chain MA

60S ribosomal protein L8

Chain S3

Small subunit ribosomal RNA; SSU rRNA