IL_7QVP_288

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7QVP|1|L6|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_288 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1194

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7QVP|1|L6|U|3927
7QVP|1|L6|A|3928
7QVP|1|L6|G|3929
*
7QVP|1|L6|U|4181
7QVP|1|L6|G|4182
7QVP|1|L6|G|4183
7QVP|1|L6|G|4184

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain B5

Transfer RNA; tRNA

Chain MA

60S ribosomal protein L8

Chain MN

60S ribosomal protein L15

Chain Mo

60S ribosomal protein L36a