IL_7QVP_314

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7QVP|1|L6|A|4656, 7QVP|1|L6|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_314 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.238

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7QVP|1|L6|U|4641
7QVP|1|L6|U|4642
*
7QVP|1|L6|A|4655
7QVP|1|L6|A|4656
7QVP|1|L6|U|4657
7QVP|1|L6|G|4658

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MR

60S ribosomal protein L19

Chain Md

60S ribosomal protein L31