IL_7QVP_320

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_320 not in the Motif Atlas

Geometric match to IL_7RQB_083

Geometric discrepancy: 0.2716

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

7QVP|1|L6|G|4769
7QVP|1|L6|U|4770
7QVP|1|L6|C|4771
*
7QVP|1|L6|G|4863
7QVP|1|L6|U|4864
7QVP|1|L6|C|4865

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MH

60S ribosomal protein L9

Chain MO

60S ribosomal protein L13a