IL_7QVP_341
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_341 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.1458
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|L9|G|21
7QVP|1|L9|A|22
7QVP|1|L9|A|23
7QVP|1|L9|C|24
7QVP|1|L9|G|25
7QVP|1|L9|C|26
7QVP|1|L9|G|27
*
7QVP|1|L9|C|52
7QVP|1|L9|U|53
7QVP|1|L9|A|54
7QVP|1|L9|A|55
7QVP|1|L9|G|56
7QVP|1|L9|C|57
Current chains
- Chain L9
- 5S ribosomal RNA
Nearby chains
- Chain MD
- 60S ribosomal protein L5
- Chain MJ
- 60S ribosomal protein L11
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