IL_7QVP_361

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGACC*GGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_361 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.341

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QVP|1|S2|C|188
7QVP|1|S2|U|189
7QVP|1|S2|G|190
7QVP|1|S2|A|191
7QVP|1|S2|C|192
7QVP|1|S2|C|193
*
7QVP|1|S2|G|206
7QVP|1|S2|G|207
7QVP|1|S2|G|208
7QVP|1|S2|A|209
7QVP|1|S2|U|210
7QVP|1|S2|G|211

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8