IL_7QVP_362

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUU*AACCUCGGG

Length

14 nucleotides

Bulged bases

7QVP|1|S2|U|305, 7QVP|1|S2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|S2|C|216
7QVP|1|S2|A|217
7QVP|1|S2|U|218
7QVP|1|S2|U|219
7QVP|1|S2|U|220
*
7QVP|1|S2|A|301
7QVP|1|S2|A|302
7QVP|1|S2|C|303
7QVP|1|S2|C|304
7QVP|1|S2|U|305
7QVP|1|S2|C|306
7QVP|1|S2|G|307
7QVP|1|S2|G|308
7QVP|1|S2|G|309

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8