IL_7QVP_377

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

7QVP|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|S2|A|599
7QVP|1|S2|G|600
7QVP|1|S2|G|601
7QVP|1|S2|G|602
7QVP|1|S2|C|603
7QVP|1|S2|A|604
7QVP|1|S2|A|605
7QVP|1|S2|G|606
7QVP|1|S2|U|607
7QVP|1|S2|C|608
*
7QVP|1|S2|G|635
7QVP|1|S2|C|636
7QVP|1|S2|U|637

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30