IL_7QVP_403

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

7QVP|1|S2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_403 not in the Motif Atlas

Geometric match to IL_6CZR_148

Geometric discrepancy: 0.1565

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

7QVP|1|S2|G|1206
7QVP|1|S2|G|1207
7QVP|1|S2|A|1208
*
7QVP|1|S2|U|1691
7QVP|1|S2|U|1692

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain A4

mRNA

Chain Sa

40S ribosomal protein S26