IL_7QVP_452

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_452 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2491

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7QVP|1|S3|C|188
7QVP|1|S3|U|189
7QVP|1|S3|G|190
7QVP|1|S3|A|191
7QVP|1|S3|C|192
*
7QVP|1|S3|G|207
7QVP|1|S3|G|208
7QVP|1|S3|A|209
7QVP|1|S3|U|210
7QVP|1|S3|G|211

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RI

40S ribosomal protein S8