IL_7QVP_461

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7QVP|1|S3|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_461 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1678

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7QVP|1|S3|U|487
7QVP|1|S3|U|488
7QVP|1|S3|A|489
*
7QVP|1|S3|U|511
7QVP|1|S3|A|512

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RE

40S ribosomal protein S4, X isoform

Chain RJ

40S ribosomal protein S9

Chain RY

40S ribosomal protein S24