IL_7QVP_464

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_464 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2629

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7QVP|1|S3|C|527
7QVP|1|S3|A|528
*
7QVP|1|S3|U|557
7QVP|1|S3|G|558
7QVP|1|S3|G|559

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RJ

40S ribosomal protein S9

Chain Re

40S ribosomal protein S30

Chain SO

40S ribosomal protein S14