IL_7QVP_468
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7QVP|1|S3|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_468 not in the Motif Atlas
- Geometric match to IL_8AF0_002
- Geometric discrepancy: 0.309
- The information below is about IL_8AF0_002
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
7QVP|1|S3|A|599
7QVP|1|S3|G|600
7QVP|1|S3|G|601
7QVP|1|S3|G|602
7QVP|1|S3|C|603
7QVP|1|S3|A|604
7QVP|1|S3|A|605
7QVP|1|S3|G|606
7QVP|1|S3|U|607
7QVP|1|S3|C|608
*
7QVP|1|S3|G|635
7QVP|1|S3|C|636
7QVP|1|S3|U|637
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RC
- 40S ribosomal protein S2
- Chain RD
- 40S ribosomal protein S3
- Chain RJ
- 40S ribosomal protein S9
- Chain Re
- 40S ribosomal protein S30
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