IL_7QVP_477

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_477 not in the Motif Atlas

Geometric match to IL_7A0S_078

Geometric discrepancy: 0.181

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

7QVP|1|S3|U|805
7QVP|1|S3|U|806
7QVP|1|S3|G|807
*
7QVP|1|S3|C|856
7QVP|1|S3|U|857
7QVP|1|S3|A|858

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RE

40S ribosomal protein S4, X isoform

Chain RL

40S ribosomal protein S11

Chain RW

40S ribosomal protein S15a