IL_7QVP_488
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_488 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.1356
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|S3|A|1042
7QVP|1|S3|G|1043
7QVP|1|S3|G|1044
7QVP|1|S3|U|1045
7QVP|1|S3|U|1046
7QVP|1|S3|C|1047
*
7QVP|1|S3|G|1071
7QVP|1|S3|U|1072
7QVP|1|S3|U|1073
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain L6
- Large subunit ribosomal RNA; LSU rRNA
- Chain MA
- 60S ribosomal protein L8
- Chain Mp
- 60S ribosomal protein L37a
- Chain RO
- 40S ribosomal protein S14
- Chain Ra
- 40S ribosomal protein S26
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