IL_7QVP_498
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_498 not in the Motif Atlas
- Geometric match to IL_4V88_444
- Geometric discrepancy: 0.1256
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7QVP|1|S3|C|1230
7QVP|1|S3|C|1231
7QVP|1|S3|U|1232
*
7QVP|1|S3|G|1526
7QVP|1|S3|C|1527
7QVP|1|S3|G|1528
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain B5
- Transfer RNA; tRNA
- Chain RP
- 40S ribosomal protein S15
- Chain RQ
- 40S ribosomal protein S16
- Chain RS
- 40S ribosomal protein S18
- Chain RT
- 40S ribosomal protein S19
- Chain RU
- 40S ribosomal protein S20
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