IL_7QVP_521

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_521 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.0941

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QVP|1|S3|G|1706
7QVP|1|S3|U|1707
7QVP|1|S3|C|1708
*
7QVP|1|S3|G|1826
7QVP|1|S3|U|1827
7QVP|1|S3|C|1828

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain A5

mRNA

Chain D5

Transfer RNA; tRNA

Chain L6

Large subunit ribosomal RNA; LSU rRNA

Chain Mn

60S ribosomal protein L41

Chain RX

40S ribosomal protein S23