IL_7QVP_528

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_528 not in the Motif Atlas

Geometric match to IL_3BNN_005

Geometric discrepancy: 0.1112

The information below is about IL_3BNN_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

7QVP|1|S3|C|1739
7QVP|1|S3|C|1740
7QVP|1|S3|U|1741
*
7QVP|1|S3|A|1793
7QVP|1|S3|C|1794
7QVP|1|S3|G|1795

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain MW

60S ribosomal protein L24

Chain RG

40S ribosomal protein S6

Chain RI

40S ribosomal protein S8