IL_7QVP_537

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

7QVP|1|L5|C|185, 7QVP|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|C|180
7QVP|1|L5|C|181
7QVP|1|L5|G|182
7QVP|1|L5|C|183
7QVP|1|L5|U|184
7QVP|1|L5|C|185
7QVP|1|L5|G|186
7QVP|1|L5|U|187
7QVP|1|L5|G|188
7QVP|1|L5|G|189
*
7QVP|1|L5|C|252
7QVP|1|L5|G|253
7QVP|1|L5|G|254
7QVP|1|L5|C|255
7QVP|1|L5|G|256

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

Ribosomal protein L37