IL_7QVP_572

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

7QVP|1|L6|C|501, 7QVP|1|L6|C|502, 7QVP|1|L6|C|503, 7QVP|1|L6|G|504

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_572 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2807

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7QVP|1|L6|G|500
7QVP|1|L6|C|501
7QVP|1|L6|C|502
7QVP|1|L6|C|503
7QVP|1|L6|G|504
7QVP|1|L6|G|505
*
7QVP|1|L6|U|653
7QVP|1|L6|C|654

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MQ

60S ribosomal protein L18