IL_7QWQ_089

3D structure

PDB id

7QWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of ribosome nascent chain with SRP and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

7QWQ|1|5|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWQ_089 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.269

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

7QWQ|1|5|U|2312
7QWQ|1|5|A|2313
7QWQ|1|5|G|2314
*
7QWQ|1|5|C|2325
7QWQ|1|5|G|2326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain e

Ribosomal protein L32

Chain r

60S ribosomal protein L28