IL_7QWQ_098

3D structure

PDB id

7QWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of ribosome nascent chain with SRP and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7QWQ|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWQ_098 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2436

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7QWQ|1|5|C|2646
7QWQ|1|5|A|2647
7QWQ|1|5|G|2648
*
7QWQ|1|5|C|2685
7QWQ|1|5|G|2686
7QWQ|1|5|U|2687
7QWQ|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

60S ribosomal protein L34