IL_7QWQ_134

3D structure

PDB id

7QWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of ribosome nascent chain with SRP and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWQ_134 not in the Motif Atlas

Geometric match to IL_5J7L_259

Geometric discrepancy: 0.2055

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7QWQ|1|5|G|4401
7QWQ|1|5|C|4402
7QWQ|1|5|U|4403
*
7QWQ|1|5|G|4440
7QWQ|1|5|A|4441
7QWQ|1|5|U|4442

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29