IL_7QWR_047

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWR_047 not in the Motif Atlas

Geometric match to IL_5IBB_340

Geometric discrepancy: 0.3426

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7QWR|1|5|C|1474
7QWR|1|5|G|1475
7QWR|1|5|C|1476
*
7QWR|1|5|G|1489
7QWR|1|5|G|1490

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

L13

Chain a

60S ribosomal protein L27a

Chain b

60S ribosomal protein L29

Chain o

eL42