3D structure

PDB id
7QWR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
7QWR|1|5|U|1947
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QWR_073 not in the Motif Atlas
Geometric match to IL_4V9F_107
Geometric discrepancy: 0.2735
The information below is about IL_4V9F_107
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7QWR|1|5|G|1946
7QWR|1|5|U|1947
7QWR|1|5|G|1948
*
7QWR|1|5|C|2035
7QWR|1|5|C|2036

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain H
60S ribosomal protein L9
Chain S
60S ribosomal protein L18a
Chain m
60S ribosomal protein L40

Coloring options:


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