IL_7QWR_110

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7QWR|1|5|A|3901, 7QWR|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWR_110 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.1554

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7QWR|1|5|G|3900
7QWR|1|5|A|3901
7QWR|1|5|A|3902
*
7QWR|1|5|U|4558
7QWR|1|5|A|4559
7QWR|1|5|C|4560
7QWR|1|5|C|4561

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

60S ribosomal protein L17