IL_7R4X_024

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_024 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0718

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7R4X|1|2|G|411
7R4X|1|2|G|412
7R4X|1|2|G|413
*
7R4X|1|2|C|424
7R4X|1|2|G|425
7R4X|1|2|A|426
7R4X|1|2|U|427
7R4X|1|2|OMU|428
7R4X|1|2|C|429

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23