IL_7R4X_030

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GACU*AGGC

Length

8 nucleotides

Bulged bases

7R4X|1|2|A|536, 7R4X|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_030 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.3204

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7R4X|1|2|G|535
7R4X|1|2|A|536
7R4X|1|2|C|537
7R4X|1|2|U|538
*
7R4X|1|2|A|545
7R4X|1|2|G|546
7R4X|1|2|G|547
7R4X|1|2|C|548

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S30