IL_7R4X_057

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_057 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1864

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7R4X|1|2|G|1168
7R4X|1|2|G|1169
7R4X|1|2|A|1170
7R4X|1|2|G|1171
7R4X|1|2|U|1172
7R4X|1|2|A|1173
7R4X|1|2|PSU|1174
7R4X|1|2|G|1175
*
7R4X|1|2|U|1186
7R4X|1|2|G|1187
7R4X|1|2|A|1188
7R4X|1|2|A|1189
7R4X|1|2|A|1190
7R4X|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain n

60S ribosomal protein L41