IL_7R4X_071

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

C(4AC)G*CA(OMG)G

Length

7 nucleotides

Bulged bases

7R4X|1|2|A|1489

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_071 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.1488

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7R4X|1|2|C|1336
7R4X|1|2|4AC|1337
7R4X|1|2|G|1338
*
7R4X|1|2|C|1488
7R4X|1|2|A|1489
7R4X|1|2|OMG|1490
7R4X|1|2|G|1491

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain D

40S ribosomal protein S3

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29