IL_7R4X_077

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7R4X|1|2|C|1433, 7R4X|1|2|C|1434, 7R4X|1|2|C|1435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_077 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2304

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7R4X|1|2|U|1408
7R4X|1|2|A|1409
*
7R4X|1|2|U|1432
7R4X|1|2|C|1433
7R4X|1|2|C|1434
7R4X|1|2|C|1435
7R4X|1|2|C|1436
7R4X|1|2|C|1437
7R4X|1|2|A|1438

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20