IL_7R4X_099

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

7R4X|1|2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_099 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0938

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7R4X|1|2|G|145
7R4X|1|2|G|146
7R4X|1|2|A|147
7R4X|1|2|U|148
7R4X|1|2|A|149
7R4X|1|2|A|150
7R4X|1|2|C|151
*
7R4X|1|2|G|167
7R4X|1|2|C|168
7R4X|1|2|U|169
7R4X|1|2|A|170
7R4X|1|2|A|171
7R4X|1|2|OMU|172
7R4X|1|2|A|173
7R4X|1|2|OMC|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24